Node 74
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	0	1	T	1
6	0	1	0	0	C	1
7	0	0	1	0	G	1
8	0	0	0	1	T	1
9	0.02	0	0.98	0	G	0.98
10	0	0	0	1	T	1
11	0	0	0	1	T	1
12	1	0	0	0	A	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0.99	0	0.01	C	0.99
16	1	0	0	0	A	1
17	0.3	0	0.7	0	G	0.7
18	0	1	0	0	C	1
19	0	0	0	1	T	1
20	0	0	0	1	T	1
21	1	0	0	0	A	1
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.06	0	0.94	0	G	0.94
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	1	0	0	0	A	1
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.99	0	0.01	C	0.99
31	1	0	0	0	A	1
32	1	0	0	0	A	1
33	1	0	0	0	A	1
34	0.01	0.56	0.31	0.11	C	0.56
35	0.16	0.05	0.01	0.78	T	0.78
36	0	0	0.99	0	G	0.99
37	0	0	1	0	G	1
38	0	0	0	1	T	1
39	0.88	0	0.12	0	A	0.88
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.34	0	0.66	T	0.66
43	0	1	0	0	C	1
44	0	0	1	0	G	1
45	0	0.99	0	0.01	C	0.99
46	0.96	0	0.04	0	A	0.96
47	1	0	0	0	A	1
48	0	0.98	0	0.02	C	0.98
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0	0.04	0	0.96	T	0.96
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0	0.01	0	0.99	T	0.99
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	1	0	0	0	A	1
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	1	0	0	0	A	1
62	1	0	0	0	A	1
63	0	0.99	0	0.01	C	0.99
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0.01	0	0.99	T	0.99
70	0	0	1	0	G	1
71	0	0	0	1	T	1
72	0.2	0	0.8	0	G	0.8
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.01	0.91	0.04	0.04	C	0.91
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0	0	1	T	1
82	0.05	0	0.95	0	G	0.95
83	1	0	0	0	A	1
84	0.09	0.75	0.06	0.1	C	0.75
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.99	0	0.01	C	0.99
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	0.99	0	0.01	C	0.99
91	0	0	1	0	G	1
92	0.65	0	0.34	0	A	0.65
93	0	0.99	0	0.01	C	0.99
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.9	0	0.1	C	0.9
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	1	0	0	C	1
100	1	0	0	0	A	1
101	1	0	0	0	A	1
102	1	0	0	0	A	1
103	0	0	1	0	G	1
104	1	0	0	0	A	1
105	0	0.14	0	0.86	T	0.86
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.03	0.01	0.96	0	G	0.96
112	1	0	0	0	A	1
113	0	0	0	1	T	1
114	0	0	1	0	G	1
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.87	0	0.13	C	0.87
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.02	0.04	0.93	0.01	G	0.93
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0.12	0	0.88	T	0.88
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.79	0	0.21	C	0.79
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.82	0.01	0.15	0.02	A	0.82
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0	0	1	0	G	1
137	0	0	0	1	T	1
138	0	0.01	0.02	0.97	T	0.97
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.99	0	0.01	C	0.99
142	1	0	0	0	A	1
143	0	0	0	1	T	1
144	0	0	1	0	G	1
145	0.08	0	0.92	0	G	0.92
146	0	0	0	1	T	1
147	0	0.01	0.01	0.99	T	0.99
148	0	0	1	0	G	1
149	1	0	0	0	A	1
150	1	0	0	0	A	1
151	0	0	1	0	G	1
152	1	0	0	0	A	1
153	0	0.66	0	0.34	C	0.66
154	0	0	1	0	G	1
155	0	0	1	0	G	1
156	0	0.93	0	0.07	C	0.93
157	0.94	0	0.06	0	A	0.94
158	0	0.02	0	0.98	T	0.98
159	0.03	0.91	0.01	0.05	C	0.91
160	0.07	0	0.93	0	G	0.93
161	0	1	0	0	C	1
162	0.54	0.1	0.28	0.08	A	0.54
163	0.38	0.56	0.02	0.04	C	0.56
164	0.99	0	0.01	0	A	0.99
165	0.98	0	0.02	0	A	0.98
166	0.37	0.59	0.03	0.01	C	0.59
167	1	0	0	0	A	1
168	0.64	0.2	0.13	0.03	A	0.64
169	1	0	0	0	A	1
170	0	1	0	0	C	1
171	0	0.95	0	0.05	C	0.95
172	0	0	1	0	G	1
173	1	0	0	0	A	1
174	0.89	0.02	0.08	0.01	A	0.89
175	0.99	0.01	0	0	A	0.99
176	0	0.07	0	0.93	T	0.93
177	0.02	0.05	0.93	0	G	0.93
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.33	0	0.67	T	0.67
181	0.66	0	0.34	0	A	0.66
182	0.01	0.02	0	0.97	T	0.97
183	0.07	0.86	0.01	0.06	C	0.86
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0	0.43	0	0.57	T	0.57
187	1	0	0	0	A	1
188	1	0	0	0	A	1
189	0	0.99	0	0.01	C	0.99
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.02	0	0.98	T	0.98
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.07	0	0.92	T	0.92
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	1	0	0	C	1
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	1	0	0	C	1
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0	0.01	0	0.99	T	0.99
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0	0	1	T	1
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.02	0.94	0.01	0.03	C	0.94
220	0	0	1	0	G	1
221	1	0	0	0	A	1
222	1	0	0	0	A	1
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0	0.88	0	0.12	C	0.88
226	0	1	0	0	C	1
227	0	0	1	0	G	1
228	0.01	0.09	0	0.9	T	0.9
229	0	0	1	0	G	1
230	1	0	0	0	A	1
231	1	0	0	0	A	1
232	1	0	0	0	A	1
233	0	1	0	0	C	1
234	0	0.8	0.01	0.19	C	0.8
235	0	0	1	0	G	1
236	0	0	0	1	T	1
237	0.02	0.02	0.11	0.85	T	0.85
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.01	0	0.99	0	G	0.99
241	0	0	0	1	T	1
242	0	0	0	1	T	1
243	0	0.88	0	0.12	C	0.88
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.02	0.72	0.19	0.08	C	0.72
247	0.02	0	0.98	0	G	0.98
248	0.99	0	0	0	A	0.99
249	0	0.69	0	0.3	C	0.69
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.31	0.07	0.12	0.5	T	0.5
254	0	0.99	0	0.01	C	0.99
255	0.02	0.91	0.01	0.06	C	0.91
256	0	0	0.99	0	G	0.99
257	0.97	0.01	0.01	0	A	0.97
258	0.4	0.07	0.47	0.05	G	0.47
259	0	0.22	0	0.78	T	0.78
260	0	0	0	1	T	1
261	0.33	0	0.66	0.01	G	0.66
262	0.99	0	0.01	0	A	0.99
263	0.62	0.28	0.08	0.01	A	0.62
264	0.38	0.49	0.1	0.02	C	0.49
265	0.38	0.55	0.05	0.02	C	0.55
266	0	0.01	0	0.99	T	0.99
267	0.58	0.12	0.04	0.26	A	0.58
268	0	0	1	0	G	1
269	1	0	0	0	A	1
270	0.28	0	0.72	0	G	0.72
271	0	0.99	0.01	0	C	0.99
272	1	0	0	0	A	1
273	0.77	0	0.23	0	A	0.77
274	0	0	1	0	G	1
275	0	1	0	0	C	1
276	0.01	0.06	0	0.93	T	0.93
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.09	0	0.91	T	0.91
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0.27	0.43	0.02	0.28	C	0.43
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0	0	1	T	1
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.92	0	0.07	C	0.92
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	1	0	0	C	1
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0	0.96	0	0.04	C	0.96
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	1	0	0	0	A	1
301	0	0	0	1	T	1
302	0.13	0.04	0.01	0.82	T	0.82
303	0	0.08	0	0.92	T	0.92
304	0	0.59	0	0.41	C	0.59
305	0	0	0	1	T	1
306	0.22	0.09	0.52	0.17	G	0.52
307	0	0.16	0	0.83	T	0.83
308	0.07	0.91	0	0.02	C	0.91
309	0.47	0.24	0.08	0.21	A	0.47
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.14	0	0.86	T	0.86
313	0	0.98	0	0.01	C	0.98
314	1	0	0	0	A	1
315	0.69	0.08	0.21	0.02	A	0.69
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0	0.01	0	0.99	T	0.99
322	0	0	1	0	G	1
323	1	0	0	0	A	1
324	0.99	0	0.01	0	A	0.99
325	1	0	0	0	A	1
326	0	1	0	0	C	1
327	0.2	0.24	0.03	0.54	T	0.54
328	0	1	0	0	C	1
329	0	0	1	0	G	1
330	0	0.32	0	0.68	T	0.68
331	0	0	1	0	G	1
332	1	0	0	0	A	1
333	0.16	0	0.84	0	G	0.84
334	0	0.95	0	0.05	C	0.95
335	0	0	0	1	T	1
336	0.28	0.03	0.24	0.45	T	0.45
337	0	0.01	0	0.99	T	0.99
338	0.26	0	0.73	0	G	0.73
339	0	0.81	0	0.18	C	0.81
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	1	0	0	0	A	1
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0	0.99	0	0.01	C	0.99
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.99	0	0.01	0	A	0.99
349	0	0	1	0	G	1
350	0	0	0	1	T	1
351	0.01	0.01	0.98	0	G	0.98
352	0	0	1	0	G	1
353	0	1	0	0	C	1
354	0.23	0.02	0.71	0.05	G	0.71
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0	0	1	T	1
358	0	0	0	1	T	1
359	0	0	0	1	T	1
360	0	0	0	1	T	1
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0.96	0.01	0.02	0.02	A	0.96
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0.24	0	0.76	0	G	0.76
368	1	0	0	0	A	1
369	0	0.82	0	0.18	C	0.82
370	0.99	0	0.01	0	A	0.99
371	1	0	0	0	A	1
372	1	0	0	0	A	1
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0.02	0.04	0.93	0.01	G	0.93
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.95	0	0.05	C	0.95
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	1	0	0	C	1
385	0	0.98	0	0.02	C	0.98
386	0.99	0	0.01	0	A	0.99
387	0	1	0	0	C	1
388	0	0	1	0	G	1
389	0	0	1	0	G	1
390	0.02	0.18	0	0.8	T	0.8
391	0	0	1	0	G	1
392	1	0	0	0	A	1
393	0	0.97	0	0.02	C	0.97
394	1	0	0	0	A	1
395	1	0	0	0	A	1
396	0	1	0	0	C	1
397	0	1	0	0	C	1
398	0	0	1	0	G	1
399	0.61	0.12	0.25	0.02	A	0.61
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.97	0	0.02	0	A	0.97
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	0	0	1	0	G	1
411	0.99	0	0	0	A	0.99
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0	0	1	0	G	1
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0	0	1	0	G	1
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0.07	0.41	0.5	0.01	G	0.5
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.01	0	0.98	0	G	0.98
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	0.97	0.01	0.02	C	0.97
433	1	0	0	0	A	1
434	0	0	0	1	T	1
435	0	0.98	0	0.02	C	0.98
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0	0	1	T	1
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	0.99	0	0.01	C	0.99
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.99	0	0.01	C	0.99
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	1	0	0	C	1
451	0	0.98	0	0.02	C	0.98
452	0	0	0	1	T	1
453	0.8	0.02	0.18	0.01	A	0.8
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.01	0	0.99	T	0.99
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	0.99	0	0.01	0	A	0.99
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGATCGTGTTAGACAGCTTAGAGCAATTCAAACTGGTATATCGCAACGGTCGTAAATGGAACCGCTGTGTGGAAGCCATTGACAACATCGACAACATCAAAGATGGCGTGATGCACTCGATTGGCGATTCACTGGTTTACATGGTTGAAGACGGCATCGCACAACAAACCGAAATGTTTATCGGTAACCGTCGTTACTTCGATGTGCATTACTACCTCGAAGGCCGTGAAACCGTTGAGTTCGCCGACAAATCCGAGTTGAACCTAGAGCAAGCTTATCGCGATGAAACCGACCGCGAATTTCTGTCAGGTCAA---GGTGAAACTCGTGAGCTTTGCGAAGGCCAAGTGGCGATTTTTGAAAACGACAAAGCGTACCGCTTCCACGGTGACAACCGAGTA------AGAAAAGTGGTGCTGAAAGTGACCATCGAAGATGGCTACTTCCTAAATAAATAA

The most probable DNA sequence without gaps is:
ATGATCGTGTTAGACAGCTTAGAGCAATTCAAACTGGTATATCGCAACGGTCGTAAATGGAACCGCTGTGTGGAAGCCATTGACAACATCGACAACATCAAAGATGGCGTGATGCACTCGATTGGCGATTCACTGGTTTACATGGTTGAAGACGGCATCGCACAACAAACCGAAATGTTTATCGGTAACCGTCGTTACTTCGATGTGCATTACTACCTCGAAGGCCGTGAAACCGTTGAGTTCGCCGACAAATCCGAGTTGAACCTAGAGCAAGCTTATCGCGATGAAACCGACCGCGAATTTCTGTCAGGTCAAGGTGAAACTCGTGAGCTTTGCGAAGGCCAAGTGGCGATTTTTGAAAACGACAAAGCGTACCGCTTCCACGGTGACAACCGAGTAAGAAAAGTGGTGCTGAAAGTGACCATCGAAGATGGCTACTTCCTAAATAAATAA

The accuracy score for that sequence is 0.953752759381899

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 7.16438965495218e-12.
The natural log of that probability is -25.6618982425124.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
I	1	A	0	9999	
V	1	A	0	9999	
L	1	A	0	9999	
D	1	A	0	9999	
S	0.7	N	0.3	2.33333333333333	
L	1	A	0	9999	
E	1	A	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
K	1	A	0	9999	
L	0.517374	V	0.239382	2.16129032258065	
V	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
N	0.96	D	0.04	24	
G	1	A	0	9999	
R	1	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	1	A	0	9999	
E	1	A	0	9999	
A	1	R	0	9999	
I	1	A	0	9999	
D	0.8075	E	0.1425	5.66666666666667	
N	1	A	0	9999	
I	1	A	0	9999	
D	0.65	G	0.34	1.91176470588235	
N	1	A	0	9999	
I	1	A	0	9999	
K	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
V	1	A	0	9999	
M	1	A	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	1	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
V	1	A	0	9999	
Y	1	A	0	9999	
M	1	A	0	9999	
V	0.9292	I	0.08	11.615	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
I	0.911988	V	0.0588	15.51	
A	0.93	T	0.07	13.2857142857143	
Q	0.5544	K	0.3762	1.47368421052632	Unreliable
Q	0.4543	K	0.2849	1.59459459459459	
T	1	A	0	9999	
E	0.97	D	0.03	32.3333333333333	
M	0.856251	T	0.0693	12.3557142857143	
F	1	A	0	9999	
I	0.633798	V	0.3298	1.92176470588235	
G	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
R	0.99	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
D	1	A	0	9999	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
E	1	A	0	9999	
G	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
V	1	A	0	9999	
E	1	A	0	9999	
F	1	A	0	9999	
A	1.01	R	0	9999	
D	0.960498	N	0.019602	49	
K	1	A	0	9999	
S	0.495	T	0.3069	1.61290322580645	
E	0.835461	D	0.115236	7.25	
L	0.9922	F	0.0078	127.205128205128	
N	0.313038	K	0.294624	1.0625	Unreliable
L	0.556776	I	0.361152	1.54166666666667	
E	1	A	0	9999	
Q	0.99	E	0.01	99	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	0.99	A	0	9999	
D	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
F	0.82	Y	0.13	6.30769230769231	
L	0.8934	F	0.1066	8.38086303939962	
S	0.7553	P	0.1456	5.1875	
G	1	A	0	9999	
Q	0.882	H	0.098	9	
	0	-	0	0
G	1	A	0	9999	
E	1	A	0	9999	
T	1.01	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
L	0.976	F	0.024	40.6666666666667	
C	0.715473	Y	0.254826	2.80769230769231	
E	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
V	1	A	0	9999	
A	1.01	R	0	9999	
I	1	A	0	9999	
F	1	A	0	9999	
E	0.98	D	0.03	32.6666666666667	
N	1	A	0	9999	
D	0.76	N	0.24	3.16666666666667	
K	0.99	E	0.01	99	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
H	0.9702	Y	0.0198	49	
G	1	A	0	9999	
D	0.99	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
V	0.99	A	0	9999	
	0	-	0	0
	0	-	0	0
R	0.99	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	0.99	A	0	9999	
K	1	A	0	9999	
V	0.99	A	0	9999	
T	1	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
L	1.0094	F	0.0006	1682.33333333333	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MIVLDSLEQFKLVYRNGRKWNRCVEAIDNIDNIKDGVMHSIGDSLVYMVEDGIAQQTEMFIGNRRYFDVHYYLEGRETVEFADKSELNLEQAYRDETDREFLSGQ-GETRELCEGQVAIFENDKAYRFHGDNRV--RKVVLKVTIEDGYFLNKX

The most probable ancestral protein sequence without gaps is:
MIVLDSLEQFKLVYRNGRKWNRCVEAIDNIDNIKDGVMHSIGDSLVYMVEDGIAQQTEMFIGNRRYFDVHYYLEGRETVEFADKSELNLEQAYRDETDREFLSGQGETRELCEGQVAIFENDKAYRFHGDNRVRKVVLKVTIEDGYFLNKX

The accuracy score for that sequence is 0.958473887417219

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 0.000306437116147964
The natural log of that probability is -8.0904979911811.

